PhD Student in Bioinformatics
Development of methods for cancer detection from cell-free DNA in blood samples:
When cells die, fragments of their DNA may enter the blood stream. This DNA is extracted from blood plasma and whole-genome sequenced. General differences in fragment distributions of healthy and sick subjects are used to detect cancer. Read latest preprint
R Package Development
Development of open source R packages such as groupdata2, cvms, rearrr and xpectr.
Have written multiple tutorials and book chapters. What good are tools if no one can use them?
Music Production
Multiple albums and EPs. Latest:
Når Du Går by FLÕR (EP, 2023)
Mix and co-production.
Had & Hormoner by Navlebeskuer (EP, 2022)
Personal solo project.
Effective Altruism
Movement to optimize careers and resource use for highest positive impact.
Active in Effective Altruism Aarhus.
Involved with GivEffektivt.dk to enable Danish citizens to donate to the most effective charities per GiveWell.
Cross-dataset pan-cancer detection: Correlating cell-free DNA fragment coverage with open chromatin sites across cell types
LR Olsen et al.
Preprint, medRxiv, 2024
Speech-and text-based classification of neuropsychiatric conditions in a multidiagnostic setting
L Hansen et al.
Nature Mental Health, 2023
TextDescriptives: A Python package for calculating a large variety of metrics from text
L Hansen, LR Olsen, K Enevoldsen
JOSS, 2023
Linking the puzzle pieces of the past: a study of relational memory in children with autism spectrum disorder
RLH Mogensen, MB Hedegaard, LR Olsen, L Gebauer
Autism Research, 2020
The electroretinogram b-wave amplitude: a differential physiological measure for Attention Deficit Hyperactivity Disorder and Autism Spectrum Disorder
Irene O Lee, et al.
Journal of Neurodevelopmental Disorders, 2022
Practical Machine Learning with R: Define, build, and evaluate machine learning models for real-world applications (Book, chs 4+5)
BP Jeyaraman, LR Olsen, M Wambugu
Packt Publishing, 2019
nattrs: Get, set, update, mutate, delete nested attributes (Python package)
LR Olsen
pypi, 2023
Education
- PhD Student, Aarhus University (Current)
- MSc in Cognitive Science, Aarhus University
- BSc in Cognitive Science, Aarhus University
Experience
- Research Stay, Genome Institute of Singapore
- Machine Learning Specialist, Cercare Medical
- Machine Learning Researcher, UNSILO
Single: Tom Parentes by Navlebeskuer
February 3, 2024
My new single in the Navlebeskuer universe, Tom Parentes, is finally out on the 3rd of February, 2024! A declaration…Plot Confusion Matrix Web App
August 20, 2023
Some years ago, I was looking to plot a set of confusion matrices. Looking at the available plotting functions, I…
Single: Tom Parentes by Navlebeskuer
February 3, 2024
My new single in the Navlebeskuer universe, Tom Parentes, is finally out on the 3rd of February, 2024! A declaration…Plot Confusion Matrix Web App
August 20, 2023
Some years ago, I was looking to plot a set of confusion matrices. Looking at the available plotting functions, I…